PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G079600.2
Common NameB456_013G079600, LOC105783998
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 334aa    MW: 36286.1 Da    PI: 6.8487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G079600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14150196354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Gorai.013G079600.2 150 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 196
                         79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-12150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-5160199No hitNo description
Gene3DG3DSA:3.30.70.2602.4E-4232279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHALSPIQ  60
YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA  120
VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTTKT  180
DKASLLAEVI QHVKELKRQT CLIAETSPVP TETDELTVDT SDQDGKFVIK ASLCCEDRSD  240
LLPDLIKALK DLRLKTLKAE ITTLGGRVKN VLFITGEEQE SSCSSDGGDV IGSIQEALKA  300
VMEKSTCGDE SNSSGNVKRQ RTNISTVLQR RSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7514270.0KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465192.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y13e-99BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0D2VAU90.0A0A0D2VAU9_G
STRINGVIT_01s0011g02940.t011e-138(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-93bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]